Profile of a surface for auto cone feature

i am having an issue with my profile repeating on a cone. Its a shallow 4degree cone that when i run the first time, it will report as a profile of .0025. I know that must be correct because i also have Gage Point Diameters on the same cone. But then when i run the same part, without moving, my profile becomes approx .060. Why is this happening? Can someone please shed some light. nothing has been changed or moved. I should also mention that i am using the auto cone feature. And i am also using an auto cone for 2 other cones on the same part, and i have no issues with these.
I am asking for a profile from Datum A and Datum B. And my gage points come from Datum A. I am using that as a quick check to see if something isnt working properly. I just dont understand what is happening.